※学術論文の一部はResearchgateで閲覧できます。
ー ２０２０ー
（２１５）
M. Minoura, I. Tani, T. Ishii, and Y.-P. Gunji (2020) Squeezed and Released Self: Using a Squeeze Machine to Degrade the Peri-Personal Space (PPS) Boundary, Psychol. Conscious. Theory, Res. Pract., 2020. https://psycnet.apa.org/fulltext/2020-22819-001.html Link
ー ２０１９ ー
（２０９）
Nakamura, K. & Gunji, Y.P. Found Sci (2019) Entanglement of Art Coefficient, or Creativity. https://doi.org/10.1007/s10699-019-09586-8 Link
（２１０）
Gunji YP and Nakamura K (2019) Dancing chief in the brain or consciousness as entanglement. Foundations of Science. https://doi.org/10.1007/s10699-019-09585-9. Link
（２１１）
Gunji YP, Tani I & Shirakawa T (2019) Broken paradox of the heap: Comment on "Does being multi-headed make you better at solving problems? A survey of Physarum-based models and computations". Physics of Life Review. DOI: 10.1016/j.plrev.2019.01.008. Link
（２１２）
Haruna, T. & Gunji, Y. P. (2019) Ordinal Preferential Attachment: A Self-Organizing Principle Generating Dense Scale-Free Networks. Scientific Reports 9(1):4130, DOI: 10.1038/s41598-019-40716-1. Link
（２１３）
Minoura, M., Tani, I., Ishii, T., Gunji, Y. P. (2019) Observing the Transformation of Bodily Self-consciousness in the Squeeze-machine Experiment. J. Vis. Exp. (145), e59263, doi:10.3791/59263. Link
（２１4）
Sonoda, K., Murakami, H., Niizato, T., Tomaru, T., Nishiyama, Y., Gunji, Y.P. (2019) Propagating wave based on transition of interaction within animal group, Biosystems (185), 104019, ISSN 0303-2647, https://doi.org/10.1016/j.biosystems.2019.104019. Link
ー ２０１８ ー
（２０２）
Horry, Y., Yoshinari, A., Nakamoto, Y., Gunji, YP., (2018) Modeling of decision-making process for moving straight using inverse Bayesian inference, Biosystems,163 (2018) pp.70-81 Link
（２０３）
Sakiyama, T., and Gunji, YP., (2018) Optimal random search using limited spatial memory. Royal Society open science, 5(3), 171057. doi:10.1098/rsos.171057 Link
（２０４）
Vallverdú, J. Castro, O., Mayne, R., Talanov, M., Levin, M., Baluska F., Gunji, YP., Dussutour A., Zenil, H., Adaamtzky A. (2018). Slime mould: The fundamental mechanisms of biological cognition. BioSystems 165, 57-70.
Link
（２０５）
Gunji, YP., and Balaz, I., (2018) Embryogenic remodeling of global chromatin and its role on structure of corresponding lattice representation, Biosystems 173: 273-280. Link
（２０６）
Murakami, H., Tomaru, T., Gunji, YP., (2018) Exclusive shift from path integration to visual cues during the rapid escape run of fiddler crabs, Animal Behaviour,144, pp. 147-152 Link
（２０７）
Gunji, YP., Murakami, H., Tomaru, T., Basios, V., (2018) Inverse Bayesian inference in swarming behaviour of soldier crabs. Phil. Trans. R. Soc. A 376, 20170370. (doi:10.1098/rsta.2017.0370) Link
（２０８）
Uragami D and Gunji YP (2018) Universal emergence of 1/f noise in asynchronously tuned elementary cellular automata. Complex Systems 27399-414. Link
ー ２０１７ ー
（１９７）
Gunji, YP., Shinohara, S., Haruna, T., BasiosInverse, V., (2017) Bayesian inference as a key of consciousness featuring a macroscopic quatum logic structure BioSystems, 152 (2017), pp. 44-63
（１９８）
H. Murakami, T. Niizato, Y.P. Gunji (2017) Emergence of a coherent and cohesive swarm based on mutual anticipation Sci. Rep., 7 (2017), p. 46447
（１９９）
Basios V., Gunji, YP., (2017) Chaotic dynamics in biological information processing: revisiting and revealing its logic (a mini-review). Opera Med. Physiol. 3, 1–13.
（２００）
Gunji, YP., Minoura, M., Kojima, K., Horry, Y., (2017) Free will in Bayesian and inverse Bayesian inference-driven endo-consciousness Progr. Biophys. Molec. Biol., 131 (2017), pp. 312-324 Link
（２０１）
Murakami, H., Tomaru, T., Gunji, YP., (2017) Interaction between path integration and visual orientation during the homing run of fiddler crabs, Royal Society Open Science, 4 (2017), p. 170954
ー ２０１６ ー
（１８９）
Minoura, M., Sonoda, K., Sakiyama, T., and Gunji YP., (2016) Rotating panoramic view: interaction between visual and olfactory cues in ants. Royal society open science, 3, 150426, DOI: 10.1098/rsos.150426.
（１９０）
Tomaru, T., Murakami, H., Niizato, T., Nishiyama, Y., Sonoda, K., Moriyama, T., and Yukio-Gunji, YP., (2016) Information transfer in a swarm of soldier crabs, Artif Life Robotics, DOI 10.1007/s10015-016-0272-y.
（１９１）
Sakiyama, T., Gunji, YP., (2016) Lévy-like movements in Japanese carpenter ants: Experimental and theoretical approaches, Ecological Complexity, 26 (2016), pp. 21-28
（１９２）
Sakiyama, T., Gunji, YP., (2016) The Kanizsa Triangle Illusion in Foraging Ants, BioSystems 142, 9-14.
（１９３）
Sakiyama, T., Gunji, YP., (2016) Emergent weak home-range behaviour without spatial memory, R. Soc. Open Sci., 3 (2016), p. 160214
（１９４）
Sakiyama, T., Gunji, YP., (2016) Moderated Pattern Formations on Trail-Laying Foraging, Proceedings of the First International Symposium on Swarm Behavior and Bio-Inspired Robotics (SWARM2015) (Kyoto, Japan).
（１９４）
Gunji, YP., Haruna, Y., Uragami, D., (2016) Causal and acuasal sets based on a quotient lattice. J Comput Eng Inf Technol 2016, 5:1, doi.org/10.4172/2324-9307.1000143.
（１９５）
Gunji, YP., Sonoda, K., Basios, V., (2016) Quantum cognition based on an ambiguous representation derived from a rough set approximation. Biosystems, 141, 55-66.
（１９６）
郡司ペギオ幸夫, (2016) アナロジーの位相：利口なハンスの知性はどこにあるか, “科学と文化をつなぐ、アナロジーという思考様式（春日直樹編,東京大学出版会）”.pp.307-328.
ー ２０１５ ー
（１７６）
Yamachiyo M, Adamatzky A and Gunji YP (2015) Physarum plasmodium perceives ambiguous stimulus as either attractant or repellent, AIP Conf. Proc. 1648, 580013 (2015); http: //dx. doi.org /10. 1063/1.4912821.
（１７７）
Mutoh A and Gunji YP (2015) Synchronization in asynchronous automata evaluated by local active information strage. AIP Conf. Proc. 1648, 580013 (2015);http://dx.doi.org/10.1063/1.4912822
（１７８）
Nakamura, T and Gunji YP (2015) Crossmodal audio-visual effects in motion prediction Proceedings of the twentieth international symposium on artificial life and robotics , pp. 840-843.
（１７９）
Murakami H, Tomaru T, Niizato T, Nishiyama Y, Moriyama T and Gunji YP (2015) “Collective behavior of soldier crab swarm in both ring- and round-shaped arenas” Proceeding of The Twentieth International Symposium on Artificial Life and Robotics. pp. 831-835.
（１８０）
Sakiyama, T and Gunji YP (2015) Modulation effect with global ambiguity in 2-dimensional random walk, International Journal of Parallel, Emergent and Distributed Systems, DOI:10.1080/17445760.2015.1016518
（１８１）
Niizato, T. and Gunji YP (2015) Ongoing Processes in a Fitness Network Model under Restricted Resources”PLOS ONE. Accepted.
（１８２）
Murakami H, Niizato T, Tomaru T, Nishiyama Y, Gunji YP (2015) Inherent noise appears as a Lavy walk in fish schools. Scientific Report accepted.
（１８３）
Sakiyama, T., Gunji, YP., (2015) Weber-Fechner relation and Lévy-like Searching Stemmed from Ambiguous Experiences, Physica A, 438, 161–168.
（１８４）
Sakiyama, T., Gunji, YP., (2015) Modulation effect with global ambiguity in 2-dimensional random walk, Int J.Par. Emer.Dist. Sys. published online, DOI:10.1080/17445760.2015.1016518.
（１８５）
Murakami, H., Niizato, T., Tomaru, T., Nishiyama, Y., Gunji, YP., (2015) Inherent noise appears as a Lévy walk in fish schools, Scientific Reports, vol. 5, pp. 10605.
（１８６）
Murakami, H., Niizato, T., Tomaru, T., Nishiyama, Y., Moriyama, T., Gunji, YP., (2015) Collective behavior of soldier crab swarm in both ring- and round-shaped arenas, Artificial Life and Robotics, 20, 315-319.
（１８７）
Murakami, H., Niizato, T., Tomaru, T., Nishiyama, Y., Gunji, YP., (2015) Schooling fish change internal movement strategy due to their density. Proceedings of SWARM 2015.
（１８８）
Gunji, YP., Tomaru, T., Murakami, H., Niizato, T., (2015) Pursuit and escape mechanism in the swarm of soldier crabs. Proceedings of SWARM 2015.
ー ２０１４ ー
（１６０）
Sakiyama, T, Gunji YP (2014) The relationship between randomness and power-law distributed move lengths in random walk algorithms”, Physica A 402, 76–83.
（１６１）
Gunji, YP (2014) Self-organized criticality in asynchronously tuned elementary cellular automata. Complex Systems 23, 55-69.
（１６２）
Iori T, Yamachiyo, M, Shirakara T & Gunji YP (2014) Kaniza illusory contours appearing in the plasmodium pattern of Physarum polycepharum. Fronttiers in Cellular and Infection Microbiology. doi: 10.3389/fcimb.2014.00010.
（１６３）
Sakiyama, T, Gunji YP (2014) The relationship between randomness and power-law distributed move lengths in random walk algorithms”, Physica A 402, 76–83.
（１６４）
Gunji, YP (2014) Self-organized criticality in asynchronously tuned elementary cellular automata. Complex Systems 23, 55-69.
（１６５）
Sawa, K. and Gunji YP (2014) An emergence of formal logic induced by an internal agent. BioSystems 124, 39-45. doi:10.1016/j.biosystems.2014.08.005
（１６６）
Iori T, Yamachiyo, M, Shirakara T & Gunji YP (2014) Kaniza illusory contours appearing in the plasmodium pattern of Physarum polycepharum. Fronttiers in Cellular and Infection Microbiology. doi: 10.3389/fcimb.2014.00010.
（１６７）
Niizato, T, Murakami H, Gunji YP (2014) Emergence of the scale invariant proportion in a flock from the metric-topological interaction. BioSystems 119, 62-68.
（１６８）
Murakami, H., Tomaru, T., Nishiyama Y., Moriyama T., Niizato, T.& Gunji YP (2014) Emergent runaway into an avoidance area in a swarm of soldier crabs. PLoS ONE 9(5): e97870, doi:10.1371/journal.pone.0097870.
（１６９）
Gunji, YP (2014) Extended self organized criticality in asynchronously tuned cellular automata. In: Chaos, Information Processing and Paradoxical Games (Vasileios ed.) World Scientific.
（１７０）
Gunji YP, Sakiyama T, Murakami H(2014) Punctuated equilibrium based on a locally ambiguous niche. BioSystems, 123, 99-105, doi:10.1016/j.biosystems.2014.05.005.
（１７１）
Niizato, T, Murakami H, Gunji YP (2014) Emergence of the scale invariant proportion in a flock from the metric-topological interaction. BioSystems 119, 62-68.
（１７２）
Gunji, YP (2014) Extended self organized criticality in asynchronously tuned cellular automata. In: Chaos, Information Processing and Paradoxical Games (Vasileios ed.) World Scientific.
（１７３）
Sakiyama T, Sasaki A and Gunji YP (2014) Origin of Kanizsa triangle illusion. In: S.-Y. Rhee et al. (eds.), Soft Computing in Machine Learning, Advances in Intelligent Systems and Computing 273, pp. 95-103, DOI: 10.1007/978-3-319-05533-6_10.
（１７４）
村上 久、郡司 ペギオ幸夫、(2014)「規則の適用と誤用:自律的に戦略を変えるランダムサーチのモデル」、第28回人工知能学会大会論文集、03a-3.
（１７５）
Murakami H, Niizato T and Gunji, YP (2014) “Noise in shoaling fish appears as several power-law behaviors” Proceeding of European conference on complex systems 2014
ー 〜２０１３ ー
（１）
Tazawa, J., Gunji, Y. and Mori, K. (1984). A visean brachiopod fauna from the Mano Formation, Soma district, Abukuma mountains, northeast Japan. Trans. Proc. Paleont. Soc. Japan, NS, 134, 347-360.
（２）2－5が博士論文の一部
郡司幸夫 (1986)．種子島沖の現生腕足動物群集構造：不均質環境の競争モデルとその解析．化石，40, 17-34．
（３）2－5が博士論文の一部
Gunji, Y. (1987). Metamorphosis of the loop in the Cenozoic Dallinacea (Brachiopoda: Terebratulida). Lethaia, 20(3), 239-255.
（４）2－5が博士論文の一部
Gunji, Y. (1987). Structure for wave signaling: the mechanism of loopmetamorphosis and rib pattern in brachiopods. Rev. Biol., 80(2), 205-208.
（５）2－5が博士論文の一部
Gunji, Y. (1989). Branching growth of ribbing patterns and the significance of concealed signals. J. theor. Biol.,139,251-270.
（６）
Gunji, Y. (1990). Pigment color patterns of molluscs as autonomy, generated by asynchronous automata. Biosystems, 23, 317-334.
（７）
Gunji, Y. (1990). The algebraic properties of finite cellular automata. PhysicaD 41, 282-294.
（８）
Gunji, Y. & Nakamura, T. (1990). Non-definite form for autopoiesis, illustrating automata in the forward and backward time, IEEE/EMBS 12(4), 1778-1780.
（９）
郡司幸夫、長島知正 (1990)．生物学的自律性とその形式化．計測と制御 29 (10):17-22.
（１０）
Gunji, Y. & Nakamura, T. (1991). Time reverse automata patterns generated by Spencer-Brown's modulator: invertibility based on autopoiesis, Biosystems, 25, 151-177.
（１１）
Gunji, Y. & Konno, N. (1991). Artificial life with autonomously emerging boundaries. Appl. Math. & Comp. 43, 271-298.
（１２）
Konno, N. & Gunji, Y. (1991). Mathematical construction of an autonomous artificial life. Appl. Math. & Comp. 46, 33-58.
（１３）
Nakamura, T. & Gunji, Y. (1991). Models for self-repairing system of calcareous algae. Biosystems 26, 99-115.
（１４）
Gunji, Y-P. (1992). Form of life: It is possible but not necessary. Appl. Math. & Comp. 47, 267-288.
（１５）
Gunji, Y-P. (1992). Autonomous life: The outside of a system formally appears only throuth proof of the incompleteness of the system. Rev.Biol. 84, 563-564.
（１６）
Ito, K. & Gunji, Y-P. (1992). Self-organization toward criticality in the game of life. Biosystems 26, 135-138.
（１７）
Gunji, Y-P., Shinohara, S. & Konno, N. (1993). Learning processes based on incomplete identification and information generation. Appl. Math. & Comp. 55, 219-253.
（１８）
Gunji, Y-P. (1993). Form of life : Unprogrammability Constitutes the outside of a system and its autonomy. Appl. Math. & Comp. 57, 19-76.
（１９）
Gunji, Y-P., Nakamura, T. & Konno, N.(1993). Final cause in pigmentation pattern: disequilibration leads to the articulation into the consistent system and final cause. N. Jbh. Geol. Paleont. 190, 219-236.
（２０）
Seilacher, A. & Gunji, Y-P. (1993).Morphogenetic countdown in heteromorph shells: limits of programmability. N. Jbh. Geol. Paleont. 190,237-265.
（２１）
Gunji, Y-P. & Sadaoka, H.(1993). An internal choice expressed in the relationship between Pseudo-Boolean algebra and Boolean algebra. Proc. Norta93:Theory and its applications, 347-353.
（２２）
Gunji, Y-P.(1994). Autonomic life as the proof of incompleteness and Lawvere's theorem of fixed point. Appl. Math. & Comp. 61,231-267.
（２３）
Nakamura, T. & Gunji, Y-P. (1994). Algebraic properties of backward dynamics. Appl. Math. & Comp. 62:103-127.
（２４）
Ito, K. & Gunji, Y-P. (1994). Self-organization of living systems towards criticality at the edge of chaos. Biosystems 33, 17-24.
（２５）
郡司ﾍﾟｷﾞｵｰ幸夫、伊東敬祐、貞岡久里(1994)生命の様相－非論理的閉包とブーツストラッピング系．日本機械学会誌 97(906), 610-613.
（２６）
Gunji, Y-P.(1995). Global logic resulting from disequilibration process. Biosystems 35, 33-62.
（２７）
Gunji, Y-P., Sadaoka, H. & Ito, K.(1995). Inter- and intra-cellular computation model based on Boolean vs non-Boolean inconsistency. Biosystems 35, 213-217.
（２８）
Nakamura, T. & Gunji, Y-P.(1995). The information generated in a man-to-man game "renju (go-bang)". Biosystems 35, 218-222.
（２９）
Ito, K. & Gunji, Y-P.(1995). Arrow of time in a reversible cellular automaton. In: Proc. Int. Conf. Dynamical Systems and Chaos, World Scientific, Singapore, pp. 113-117.
（３０）
Gunji, Y-P., Toyoda, S. & Migita, M.(1996). Tree and loop as moments for measurement. Biosystems 38:127-133.
（３１）
Gunji, Y-P. & Toyoda, S. (1996). A model for a generalized measurement process. In: Research-in Progress III (Lasker, G. ed.),pp.26-30. International Institute for Advanced Studies, Ontario.
（３２）
Gunji, Y-P., Ito, K. & Sadaoka, H.(1996). Bootstrapping system defined by inconsistent relation between Boolean and non-Boolean logic. Appl.Math.Comput.79:43-98.
（３３）
Gunji, Y-P., Ito, G. & Kitabayashi, N.(1996). The difference of status between internal and external measurement. Symmetry: Culture and Science.7(3):269-280
（３４）
Gunji, Y-P. (1996) Behavioral plasticity of hermit crabs: a preliminary report Rev.Biologia 89:69-86.
（３５）
Migita, M. & Gunji, Y-P. (1996) Plasticity in symbiotic behavior as demonstrated by a gobiid fish (Amblyeleotris steinitzi) associated with alpheid shrimps. Rev.Biologia 89:389-406.
（３６）
Gunji, Y-P. (1996) On the aspect of origin. In: Actes du Symposium ECHO (Ehresmann, A.C., Farre, G. & Vangbremeersch,J-P. eds.), pp.94-100. Univerite de Picardie, Amiens.
（３７）
Gunji, Y-P. (1997) Degeneracy of localized structure renormalizing infinite time and space. World Future 49:483-497.
（３８）
Gunji, Y-P. & Toyoda, S. (1997) Dynamically changing interface as a model of measurement in complex systems. PhysicaD101:27-54.
（３９）
Ito, K. & Gunji, Y-P. (1997) Self-organized marginal stability resulting from inconsistency between fuzzy logics and deterministic logics: An application to Biological systems. Biosystems 41:179-190.
（４０）
Ito, K. & Gunji, Y-P. (1997) Self-organized criticality resulting from minimization of perpetual disequilibration. PhysicaD102:275-284.
（４１）
Moriyama, T. & Gunji, Y-P. (1997)Autonomous learning in Octopus. Ethology103:499-513.
（４２）
Gunji, Y-P. & Kusunoki, Y. (1997) A model of incomplete identification illustlating schooling behaviors. Chaos, Solitons & Fractals 8(10):1623-1630.
（４３）
Gunji, Y-P. & Ito, G. (1997) Toward a theory of the origin of boundary. Viva Oligino 25:205-221.
（４４）
Gunji, Y-P., Ito, K. & Kusunoki, Y. (1997) Formal model of internal measurement: alternate changing between recursive definition and domain equation. PhysicaD110:289-312.
（４５）
Kitabayashi, N. & Gunji, Y-P. (1997) Making decision in estimating pheromone by an ant itself, expressed as a cause-effect loop. Rev.Biologia 90:393-422.
（４６）
Gunji, Y-P., Ito, K. & Kusunoki, Y. (1998) Ontological measurement. BioSystems 46:175-183.
（４７）
Gunji, Y-P., Migita, M. & Toyoda, S.(1998) From state- to measurement- orietned theory: Degeneraqcy of proper noun. In: Urobolos or Biology between mythology and philosophy (Lugowski, W. & Matsuno, K. eds.),pp.245-270. IFiSPAN Pub.Co., Warszawa.
（４８）
Gunji, Y-P. (1998)Asynchronous Tuning and invalidating boundary. Acta Polytechnica Scandinavia Ma91, 71-81.
（４９）
Gunji, Y-P. (1998) Decision making and regret: dynamically indefinite boundary. Methodologies for the conpcetion, design and application of soft computing.
（５０）
Kitabayashi, N. Kusunoki, Y. & Gunji, Y-P. (1998) The inevitable logical jump from machinery thinking to the acceptance of anthromorphism. Methodologies for the conpcetion, design and application of soft computing.292-296.
（５１）
Kusunoki, Y. Kitabayashi, N. & Gunji, Y-P. (1998) A model of ants generating and degenerating routes, Methodologies for the conpcetion, design and application of soft computing.297-300.
（５２）
Watanabe, T. Kitabayashi, N. & Gunji, Y-P. (1998) Prey and predator model applying incomplete identification model. Methodologies for the conpcetion, design and application of soft computing.288-291.
（５３）
Gunji, Y-P. & Ito, G. (1999) Orthomodular lattice obtained from addressing a fixed point. Physica D126:261-274.
（５４）
Gunji, Y-P., Kusunoki,Y. & Ito, K. (1999) Pigmentaion of molluscs: How does global synchronization arise? In: Functional Morphology of the Invertebrate Skelton (Savazzi, E. ed.) pp. 37-55. John Willey & Sons Ltd.
（５５）
Gunji, Y-P., Kusunoki, Y., Kitabayashi, N. Mochizuki, T. Ishikawa, M. & Watanabe, T. (1999) Dual interaction producing both territorial and Schooling behavior in fish. BioSystems 50:27-47.
（５６）
Kitabayashi, N. & Gunji, Y-P.(1999) The emergence of the concept of a tool in food-retrieving behavior of the ants Formica japonica Motschulsky. BioSystems 50:143-156.
（５７）
Toyoda, S. & Gunji, Y-P. (1999) Appearance of hierarchical structure in hyper-dilation model: model of generalized measurement process. Appl. Math. Comput. 104, 153-178.
（５８）
Mizukami, E. Migita, M. & Gunji, Y-P. (1999) Self-similar pattern in conceptualization in goldfish. BioSystems 54, 91-104.
（５９）
Gunji, Y-P. Higashi, H. & Nomura, S.(2000)On-going process via completion. In: Computing Anticipatory Systems: CASYS1999 (Dubois, D. ed.), pp. 479-490, AIP, New-York.
（６０）
Nomura & Gunji (2000) Autonomous choice in the learning process of a turtle, Chinenys reevesii. BioSystems 56, 33-42.
（６１）
Migita, M. & Gunji, Y.-P. (2000).Temporal criterion for behavior: orientation of the young Japanese flounder Paralichthys olivaceus. Behavioral Processes 52, 77-87.
（６２）
Shinohara, S. ＆ Gunji, Y.-P. (2001) Emergence and collapse of money through reciprocity. Appl.Math.& Comput.117, 131-150.
（６３）
Gunji, Y.-P. & Higashi, H. (2001) The origin of universality: making and invalidating free category. Physica D 156, 283-313.
（６４）
Aono, M. & Gunji, Y.-P. (2001). Autonomous selection and indefinite goals: A system using Bezier curves as dynamically re-defined transition rules. In: Computing Anticipatory Systems(Dubois, D. ed.), AIP, Conf. Proc. 573, 242-256.
（６５）
Gunji, Y.-P., Aono, M., Higashi, H. & Takachi, Y. (2001) The third wholeness as an endo-observer. In: Science of Interface (Diebner, H.H., Druckrey, T. & Weibel, P. eds.), Genista verlag, Tubingen, pp.111-130.
（６６）
Ito, K. & Gunji, Y-P., (2001) An autocatarytic reaction is the prisoner’s dilemma game when viewed from the eyes of molecules. In: Science of Interface (Diebner, H.H., Druckrey, T. & Weibel, P. eds.), Genista verlag, Tubingen, pp.136-142.
（６７）
Gunji, Y-P. Higashi, H. & Takachi (2001) Time emergence from incomplete clock, based on internal measurement. In: What should be computed to understand and make brain functions?(Yamakawa, T. & Matsumoto, G. eds.), World Scientific, pp.149-181.
（６８）
Kitabayashi, N. Kusunoki, Y. & Gunji, Y-P. (2001) The logical jump in shell changing in hermit crab and tool experiment in the ants. In: What should be computed to understand and make brain functions?(Yamakawa, T. & Matsumoto, G. eds.), World Scientific, pp.183-205.
（６９）
Gunji, Y.-P., Aono, M. & Higashi, H. (2001) Local semantics as a lattice based on the partial-all quantifier. In: Computing Anticipatory Systems (Dubois, D. ed.), pp. 479-490, Springer, New-York.
（７０）
Gunji, Y.-P. Aono,M. & Hihashi, H.(2001) Local Semantics based on a partial all-quantifier, Int. J. Comput. Anticipat. Systems 8, 303-318.
（７１）
Gunji, Y.-P., Kusunoki, Y. & Aono, M. (2002) Interface of global and local semantics in a self-navigating system based on the concept lattice. Chaos, Solitons & Fractals 13(2), 261-284.
（７２）
Nakajima, Y. & Gunji, Y.-P. (2002) The dynamically changing model of exchange as interaction between cone-relation and equivalent relation. Appl.Math.& Comput. 126, 299-318.
（７３）
Fukano,T. & Gunji,Y.-P. (2003). Growth rate change driven by external perturbation in the Azuki bean weevil. Chaos, Solitons & Fractals 17, 723-729.
（７４）
Takachi, Y. & Gunji, P.Y., (2003). Punctuated Equilibrium in Thoroughbred Evolution and its Model based on Asynchronous Clocks. Chaos, Solitons & Fractals 19, 555-562.
（７５）
Aono,M. ＆ Gunji, Y.-P. (2003). Beyond input-output computings: error-driven emergence with parallel non-distributed slime mold computer. BioSystems 71, 257-287.
（７６）
Aono,M. ＆ Gunji, Y.-P. (2004). Resolution of infinite-loop in hyperincursive and nonlocal cellular automata: Introduction to slime mold computing. Computing Anticiaptory Systems, AIP Conference Proceedings 718, 177-187.
（７７）
Aono,M. ＆ Gunji, Y.-P. (2004). Material implementation of hyper-incursive field on slime mold computer. Computing Anticiaptory Systems, AIP Conference Proceedings 718, 188-203.
（７８）
Gunji, Y.-P., Takahashi, T. & Aono, M.,(2004). Dynamical infomorphism: form of endo-perspective. Chaos, Solitons & Fractals 22, 1077-1101.
（７９）
Tsuda, S. Aono, M. & Gunji, Y.-P. (2004). Robust and emergent Physarum-computing. BioSystems 73, 45-55.
（８０）
Nabeshima, T. & Gunji, Y.-P. (2004). Zipf’s law in phonograms and Wreibull distribution in ideograms: comparison of English with Japanese. BioSystems 73, 131-139.
（８１）
Gunji, Y.-P. & Kamiura, M. (2004). Obaservational heterarchy as phenomenal computing. Conf. Res. Inf. & Technol. 37, 39-44.
（８２）
Gunji, Y.-P. & Kamiura, M. (2004). Observational heterarchy enhancing active coupling. Physica D 198, 74-105.
（８３）
Fukano,T. & Gunji,Y.-P. (2004). Event detection by forward- and backward-prediction, illustrating the analysis for behavior of black larder beetle Dermestes haemorrhoidalis Kuster, BioSystems 78, 81-91.
（８４）
Tsuda, S., Zauner, K. P. and Gunji, Y. P. (2005) Robot Control with Biological Cells. In Proceedings of Sixth International Workshop on Information Processing in Cells and Tissues, pp.202-216, St. William's College, York.
（８５）
Haruna, T. and Y.-P. Gunji (2005). Autonomous indefiniteness versus external indefiniteness: theory of weak topped ∩-structure and its application to elementary local cellular automaton. Physica D 202, 71-94.
（８６）
Gunji, Y.-P., T. Haruna, T. Shirakawa & K. Sonoda, 2005,Open limit: A wholeness with vagueness driving ver-handlung. In: Endo-Physics, Time, Quantum and Subjectives (Buccheri, R., A.C.Elitzur & M. Saniga eds., World Scientific)pp. 57-72.
（８７）
Gunji, Y.-P., T. Haruna, T.& Balaz, I. Extended pain as margin to paste up future. Proceedings of FIS 2005, The third Conference on the Foundations of Information Science, Paris, July 4-7, 2005. http://www.mdpi.org/fis2005/proceedings.html.
（８８）
Migita, M. Mizukami, E. & Yukio-Pegio Gunji (2005) Flexibility in starfish behavior by multi-layered mechanism of self-organization. BioSystems 82, 107-115.
（８９）
Gunji, Y.-P. Miyoshi, H. Takahashi, T. & Kamiura, M. (2006). Dynamical duality of type- and token-computation as an abstract brain. Chaos, Solitons & Fractals 27,1187-1204.
（９０）
Tsuda, S., Zauner, K. P. and Gunji, Y. P. (2006) Robot Control: From Silicon Circuitry to Cells, in Ijspeert, A. J., Masuzawa, T. and Kusumoto, S., Eds. Biologically Inspired Approaches to Advanced Information Technology, Second International Workshop, BioADIT 2006, Osaka, Japan, January 26-27, 2006, Proceedings, pp.20-32. Springer.
（９１）
M.Kamiura & Y.-P. Gunji (2006) Robust and Ubiquitous on-off intermittency in active coupling. Physica D 218:122-130.
（９２）
Gunji, Y.-P. Haruna, T. & Sawa, K. (2006). Principles of Biological organization: Local-global negotiation based on “Material cause”. Physica D 219:152-167.
（９３）
Ohta, H. & Gunji Y.-P. (2006) Recurrent neural network architecture with pre-synaptic inhibition for incremental learning. Neural Network19(8):1106-1119.
（９４）
Haruna, T. & Gunji, Y-P (2006) A Generalization of Formal Model of Internal Measurement: A Construction on One-Dimensional Maps. Int. J. Unconventional Computing 2: 231-248.
（９５）
Uragami, D. & Gunji, Y-P. (2006) Heterarchical Cognitive Maps:Anticipatory System in Virtual Maze. Int. J. Comp.Anticipatory Syst. 18: 135-144.
（９６）
Tsuda, S., Zauner, K. P. and Gunji, Y. P. (2006).Computing Substrates and Life, In Artmann, S. and Dittrich, P., Eds. Explorations in the Complexity of Possible Life, pp. 39-49. IOS Press and Synthesizing the Principles of Living Systems.
（９７）
Shirakawa T. and Gunji Y.-P. (2006) Anticipatory behavior and intracellular communication in Physarum polycephalum. COMPUTING ANTICIPATORY SYSTEMS; CASYS’05-7th International Conference (Dubois, D. ed.), AIP Conference Proceedings, 541-546.
（９８）
Kamiura, M. & Gunji, Y-P. (2006) Reactive Colimit: a View of Internal Measurement Based on a Hamiltonian System, Int. J. of Computing Anticipatory Systems 17: 47-60.
（９９）
郡司ペギオ幸夫．2007．情報リアリズムが内在する情報単位の解体．情報の科学と技術．57(5), 244-248.
（１００）
Gunji, Y-P., Sasai K. and Aono, M. (2007). Return map structure and entrainment in a time-state-scale re-entrant system Physica D, 234, 124-130.
（１０１）
Sawa K. and Gunji, Y-P.(2007). Dialogue and causality: Global description from local observations and vague communications Biosystems,90(3), 783-791.
（１０２）
Tsuda, S., Klaus-Peter Zauner and Gunji, Y.-P.(2007). Robot control with biological cells Biosystems,87(2-3), 215-223.
（１０３）
Haruna, T. and Gunji, Y.-P.(2007). Identity and its Robustness According to Second Person Descriptions. Physica D 236, 75-80.
（１０４）
Haruna, T. and Gunji, Y.-P.(2007). Duality between decomposition and gluing: A theoretical biology via adjoint functors. BioSystems 90(3), 716-727.
（１０５）
Shirakawa T. and Gunji Y.-P. (2007) Emergence of morphological order in the network formation of Physarum polycephalum, Biophys. Chem.128, 253-260.
（１０６）
Kitamura,E.S. and Gunji, Y-P. (2007) Wholeness based on gluing of incomplete information. In: Unconventional Computing (A. Adamatzky, L. Bull, De Lacy Costello eds.), pp. 303-322.
（１０７）
Uragami, D. and Gunji, Y-P.(2008), Lattice-driven cellular automata implementing local semantics. Physica D 237, 187-197.
（１０８）
上浦 基，中嶋浩平，郡司 ペギオ-幸夫．不完全状態同定と力学系の頑健性．2008、計測自動制御学会論文集特集号 44(1), 86-95.
（１０９）
Takahashi, T. and Gunji, Y.-P. (2008). Rule-following as an anticipatory act: Interaction in second person and an internal measurement model of dialogue. AIP Conf.Proc. 1051, 316-325.
（１１０）
Tauchi, Y.and Kamiura, M., Haruna, T. and Gunji, Y.-P.:(2008) Origin of Money : Dynamic Duality Between Necessity and Unnecessity. AIP Conf. Proc. 1051, 390-400.
（１１１）
Gunji, Y.-P., Sasai, K. and Wakisaka, S. (2008). Abstract heterarchy: Time/ state-scale re-entrant form. Biosystems,91(1), 13-33.
（１１２）
Gunji, Y-P., Shirakawa, T. and Haruna, T. (2008,) Life drive by damaged damage. Prog. Theor. Phys. Supplement 173, 26-37.
（１１３）
Sasai, K. and Gunji, Y-P. (2008), Heterarchy in biological systems; a logic-based dynamical model of enzymatic reaction system derived from time-state-scalere-entrant form. BioSystems 92,182-188
（１１４）
Gunji, Y.-P., Shirakawa, T., Niizato, T. and Haruna, T. (2008) Minimal model of a cell connecting amoebic motion and adaptive transport networks. J.Theor.Biol.253, 659-667.
（１１５）
郡司 ペギオ-幸夫, 澤宏司.(2008)認知的誤謬の起源：アドホック論理と対称性バイアス.認知科学15(3),442-456.
（１１６）
Haruna, T. and Gunji, Y.-P. (2008). An Algebraic Description of Development of Hierarchy. International Journal of Computing Anticipatory Systems 20, 131-143.
（１１７）
Haruna, T., Gunji, Y.-P. (2009). Wholeness and Information Processing in Biological Networks: An Algebraic Study of Network Motifs. In Y. Suzuki et al. (Eds.) Natural Computing, 2nd Internal Workshop on Natural Computing, Nagoya, Japan, December 2007, PICT1, pp. 70-80.
（１１８）
Haruna, T. and Gunji, Y.-P. (2009). Imbalance and balancing: Development of ecological flow networks. Ecological Complexity, 6, 208-218
（１１９）
Gunji, Y.-P., Haruna, T. and Kitamura, E.S. (2009), Lattice derived by double indiscernibility and computational complementarity. Lecture Notes in Artificial Intelligence 5589, 46-51.
（１２０）
Haruna, T. and Gunji, Y.-P. (2009), Double approximation and complete lattices. Lecture Notes in Artificial Intelligence 5589, 52-59.
（１２１）
Gunji, Y.-P., Haruna, T., Uragami, D. and Nishikawa, A. (2009), Subjective spacetime derived from a causal histories approach.. Physica D 238, 2016-2023.
（１２２）
Shirakawa T., Adamatzky, A., Gunji Y.-P., and Miyake, Y. (2009) On simultaneous construction of Voronoi diagram and Delaunay triangulation by Physarum polycephalum, International Journal of Bifurcation and Chaos 9, 3109-3117.
（１２３）
Gunji, Y.-P. and Haruna, T. (2010) A Non-Boolean Lattice Derived by Double Indiscernibility. Transactions on Rough Sets XII, 211-225.
（１２４）
Gunji, Y.-P. (2010) Inducing class 4 behavior on the basis of lattice analysis. Complex Systems 19: 177-194..
（１２５）
Gunji, Y.-P., Niizato, T., Murakami, H. and Tani, I. (2010) Typ-Ken (an amalgam of type and token) drives Infosphere. Knowledge, Technology and Policy 23: 227-251.
（１２６）
Gunji, Y.-P. (2010) Discrepancy between Micro- and Macro-Perspective: Making Class 4. J.Comp.Chem.Jpn. 9(3): 157-166.
（１２７）
Niizato, T., Shirakawa, T. and Gunji, Y.-P. (2010), A model of network formation by Physarum plasmodium: Interplay between cell mobility and morphogenesis
Biosystems, 100(2), 108-112
（１２８）
Niizato, T. and Gunji, Y.-P. (2010), Imperfect Identity of Autonomous Living System, Biosystems, 110(3), 159-165.
（１２９）
Shirakawa, T. and Gunji, Y.-P. and Miyake, Y. Anticipatory aspect in the cell motility of Physarum plasmodium International journal of anticipatory systems (accepted).
（１３０）
Sawa, K. and Gunji, Y.-P. (2010) Dynamical Logic Driven by Classified Inferences Including Abduction, AIP Conf. Proc 1303: 52-59.
（１３１）
Niizato, T. and Gunji, Y.-P. (2011) Applying the weak equivalence of categories between a partial map and pointed set to changing conditions in the two armed bandit problem, Journal of Complexity 16(4): 10-21.
（１３２）
Gunji, Y.-P., Shirakawa, T., Niizato, T., Yamachiyo, M. and Tani, I. (2011) An adaptive and robust biological network based on the vacant-particle transportation model. J. theor. Biol. 272: 187-200.
（１３３）
Gunji, Y.P., Murakami, H., Niizato, T., Adamatzky, A., Nishiyama, Y., Koichiro Enomoto, K., Toda, M., Moriyama, T., Matsui, T. and Iizuka, K. (2011) Embodied swarming based on back propagation through time shows water-crossing, hour glass and logic-gate behavior. Advances in Artificial Life (Lenaerts, T. et al. eds.) pp.294-301.
（１３４）
Niizato, T. and Gunji, Y.P., (2011). Metric-topological interaction model of collective behavior. Ecological Modeling 222(17), 3041-3049.
（１３５）
Shirakawa, T., Gunji, Y.-P., and Miyake, Y., (2011). An associative learning experiment using the plasmodium of Physarum polycepharum. Nano Communication Network 2, 99-105.
（１３６）
Haruna, T. & Gunji, Y.-P., (2011) Double Approximation and Complete Lattices. Fundamenta Informaticae 111, 1-14.
（１３７）
Gunji, Y.-P., Nishiyama, Y. and Adamatzky, A.(2011) Robust soldier crab ball gate. Complex Systems 20, 94-104.
（１３８）
Gunji, Y.-P., Murakami, H., Niizato, T., Sonoda, K. and Adamatzky, A. (2011) Passively active - actively passive: Mutual anticipation in a communicative swarm. In: "Integral Biomathics: Tracing the Road to Reality (eds. Plamen L. Simeonov, Leslie S. Smith,, Andree C. Ehresmann), Springer, Verlag, 169-180.
（１３９）
Gunji, Y.P., Murakami, H., Niizato, T., Adamatzky, A., Nishiyama, Y., Enomoto, K., Toda, M., Moriyama, T., Matsui, T. and Iizuka, K. (2011) An Embodied swarm in co-creation. Proceeding of SICE Annual Conference, 2587-2589.
（１４０）
Sonoda K., Kitamura E., Tani I., Shirakawa T. and Gunji Y.-P．(2011)"Analyzing double image illusion through double indiscernibility and lattice theory", TripleC 9, 510-519.
（１４１）
Murakami, H., Niizato, T., Gunji, Y.-P. (2012) A model of a scale-free proportion based on mutual anticipation. International Journal of Artificial Life Research, 3(1), 34-44.
（１４２）
Gunji, Y.-P., Murakami, H., Niizato, T., Nishiyama, T., Tomaru, T., Adamatzky, A. (2012) Robust swarm model based on mutual anticipation: swarm as a mobile network analyzed by rough set lattice. International Journal of Artificial Life Research, 3(1), 45-58.
（１４３）
Sonoda, K., Asakura, A., Minoura, M., Elwood, R.W.., Gunji, Y.-P.,, (2012) Hermit crabs perceive the extent of their virtual bodies. Biol Let. 8, pp.495-497. doi: 10.1098/rsbl.2012.0085,
（１４４）
Gunji, Y.-P., Murakami, H., Niizato, T., Sonoda, K. and Adamatzky, A. (2012) Passively active - actively passive: Mutual anticipation in a communicative swarm. In: "Integral Biomathics: Tracing the Road to Reality (eds. Plamen L. Simeonov, Leslie S. Smith,, Andree C. Ehresmann), Springer, Verlag pp.169-180.
（１４５）
Niizato, T. and Gunji, Y.-P.（2012）Fluctuation-Driven Flocking Movement in Three Dimensions and Scale-Free Correlation．PlosOne, 7, e35615.
（１４６）
Gunji, Y.-P. and Ono, R. (2012) Sociality of an agent during morphogenetic canalization: Asynchronous updating with potential resonance. BioSystems 109, 420-429.
（１４７）
Shirakawa T., Yokoyama K., Yamachiyo M., Gunji Y.-P. and Miyake Y.(2012) "Multi-scaled adaptability in motility and pattern formation of the Physarum plasmodium", Int. J. of Bio-Inspired Computation 4, pp.131-138.
（１４８）
Nisiyama. Y. Gunji, Y.-P., Adamatzky, A. (2012) Collision-based computing implemented by soldier swarms. Int. J. Parallel, Emergent and Distributed Systems. DOI: 10.1080/17445760.2012.662682
（１４９）
Fukano, T. Gunji, Y-P. (2012) Mathematical model of panic disorder.Nonlinear Dynamics Psychol Life Sci. 16(4), 457-470.
（１５０）
Gunji, Y-P and Tomoko Sakiyama (2012) Origin of Meta-Symbol : Navigation and Point Logic”. Proceedings of SCIS-ISIS, Kobe, 1191-1194.
（１５１）
Gunji, Y-P and Tomoko Sakiyama (2012) “Pilot Navigation Model for Foraging Ants”. Proceedings of SCIS-ISIS, Kobe, 307-310.
（１５２）
Sakiyama T & Gunji Y-P (2013) Garden Ant Homing Behavior Based on Local Visual Cues. Insectes Sociaux. 60(2), 155-162.
（１５３）
Sakiyama T & Gunji Y-P (2013) Emergence of an optimal search strategy from a simple random walk. J.Roy. Soc. Interface. 10(86), 20130486.
（１５４）
Adamatzky A, Armstrong R, Jones J, Gunji YP (2013) On creativity of slime mould. Int.J, General Systems.42(5), 441-457.
（１５５）
Gunji, YP, Sakiyama T, Wakisaka S, Fujii N, Nakamura T (2013) Artificial causal space-time. Advances in Artificial Life 2013, Proceedings of the twelfth European Conference on the Synthesis and Simulation of Living Systems (edited by Lio P, Miglino O, Nicosia G, Nolfi S, Pavone M), MIT Press, pp. 810-817.
（１５６）
Murakami, H. Gunji, YP (2013) Lévy-like Distribution Shown by Intermittent Search Model with Misunderstanding Switch Pattern, Advances in Artificial Life 2013, Proceedings of the twelfth European Conference on the Synthesis and Simulation of Living Systems (edited by Lio P, Miglino O, Nicosia G, Nolfi S, Pavone M), MIT Press, pp. 492-497.
（１５７）
Sonoda K, Kodama, K and Gunji, YP (2013) Awareness as observational heterrchy. Frontiers in psychology. Doi: 10.3389/fpsyg.2013.00686.
（１５８）
Sakiyama, T, Gunji YP (2013) The Müller-Lyer Illusion in Ant Foraging. PLoS ONE 8(12): e81714. doi:10.1371/journal.pone.0081714, December 11.
（１５９）
Sakiyama, T, Sasaki, A and Gunji, YP (2013) Origin of Kanizsa triangle illusion, Proceedings of The 14th International Symposium on Advanced Intelligent Systems (ISIS2013), in USB Proceedings, Daejeon, Korea.
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